Ok, I changed the Menu up to accomodate your complaints in regards to the Community Button. Moved "Main Site" to "Home" and changed that to "Site". When I finish eating dinner, I'll probably post again here with a draft of how I'll structure the menu. Then the changes will be rolled out to both the CMS and Forums. The banner has been fixed on all themes, too.
I apologize for the inconsistencies, they were there before I even got started. I have a feeling Windy's menu was meant to be the dominant one, but for some reason they broke apart as time went on. Perhaps it was because the CMS got canned? Who knows. All I know is, it's gotta get fixed. And I intend on doing it in an open fashion so if anyone wants to help me out with this, feel free to post here!