You ever thought about adding slopes an such to the mc cliff tiles like the ones in this http://www.vgmaps.com/Atlas/GB-GBC/LegendOfZelda-OracleOfSeasons-Subrosia.png basically front facing slopes for the top of the cliffs and let them be able to merge seamlessly with your cliff tiles.
Not sure what you mean exactly. Could you circle the cliff areas you are reffering to?
I have made something new today! I was looking through spriters resource Minish cap gallery and I came across the inside maps for the shrinking areas, and there was a very cool crystal formation inside it. I thought it looked cool, but I edited it to look more like a Ruppee, or more crystaline. (I was imagining a crystal theme area, maybe made of rupees, unlike rupee land, maybe a new iteration of Ruppee land

)
I expanded upon the small crystal and made small barriers, though I cannot decide whether to keep the rounded sides or the more square ones.
What do you guys think of this? Should I expand into crystal cliffs and more stuff?