Ok, I'll tell you guys the truth why no one finishes an oot or mm in 2d. People use too simple lanuguages to make them.
Game Maker, unless the graphics and code and sound is all external the loading times are going to be hell even if you do finish. Hell, even if you get to the master sword the loading times will be hell. Look at the Oot 2d CP the loading times are 14 seconds just for ONE map and a moving engine. No sword,bombs or even arrows.
RPG Maker, again with loading times will be hell. Probaly faster then GM but certainly not fast enough to make me happy or the rest of the world happy.
Flash: Not as simple as Gm or Rpgm and can seperate loading times but a bit buggy with collisions and weapons.
What we need is a group of talented C#, Java or C++ programmers to make us an Oot 2d or atleast do it with passion and not just pride.